XPRESSpipe is capable of performing a single-pass, splice-aware, GTF-guided alignment or a two-pass alignment of reads wherein novel splice junctions are ...
hisat2-vs-star
... map our reads against, and performing the read alignment using one of several splice-aware alignment tools such as STAR or HISAT2 (HISAT2 is a successor ... 939c2ea5af
hisat star, getting started with hisat stringtie and ballgown, getting started with hisat